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DeepFCS · Cellular Intelligence for Flow Cytometry

DeepFCS reads flow cytometry
like never before.

Every population found, gated and named — every finding traced back to its markers. No manual gating. No guesswork. In seconds.

Auto-gatedno manual quadrants
Agent-drivendiscovery engine
Traceableevery finding to its markers
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Markers

DeepFCS reads
every marker.

Not a chosen few — where a cytometrist reads a population on a gate, DeepFCS reads every event on every marker your panel carries, each antigen weighed as evidence, not a checkbox.

DeepFCS · Marker Summary · per-population positivity
CD34CD38CD7HLA-DR
Blast
+ pos90.9%440,119/484,424
+ pos99.7%482,976/484,424
− neg0.1%289/484,424
+ pos95.6%462,908/484,424
Lymph
− neg0.0%6/61,156
+ pos52.4%32,041/61,156
+ bright70.8%43,316/61,156
+ bright26.5%16,230/61,156
Mono
+ bright54.0%2,258/4,184
+ pos93.5%3,910/4,184
+ bright36.8%1,538/4,184
+ bright58.1%2,430/4,184
Gran
· n/a
· n/a
· n/a
· n/a
Total
80.5%442,383/549,764
94.4%518,927/549,764
8.2%45,143/549,764
87.6%481,568/549,764
status from the tube-internal negative, graded by intensity · + bright/moderate · + dim · − neg · n/a = not assessable · counts = positive / total
Scale

Thousands of events.
Nothing missed.

Every cell that crosses the laser, DeepFCS accounts for — exceptional on BD today, with more instruments on the way.

DeepFCS · Population Statistics · CD45 × SSC
PopulationEvents%
Lymph7,68576.8%
Gran1,32313.2%
Blast8568.6%
Mono1361.4%
Total10,000100%
every event assigned to a population on the CD45 × SSC backbone · real-analysis counts and proportions
Identity

Signal becomes identity.

From scatter and fluorescence, DeepFCS reconstructs what each cell actually is — built to EuroFlow and WHO standards.

Auto-Gating

It gates itself.

No manual quadrants. DeepFCS resolves lymph, mono, gran and blast on the CD45 × SSC backbone — the read it does best today — finding, naming and counting every population.

DeepFCS · CD45 × SSC · population map
CD45 vs SSC population map
auto-gated · lymph / gran / mono / blast resolved on the CD45 × SSC backbone
Deeper

Into a single
population.

DeepFCS doesn't stop at the map. It dives into one population — every lymphocyte read on its own surface markers.

Sub-populations

And splits it again.

Within the lymphocytes, distinct sub-populations resolve — proportions, clonality, the cells that matter. Precision once thought out of reach.

DeepFCS · lymph · CD10 × CD19
CD10 vs CD19 B-cell quadrant
auto-gated lymphocytes · B-cell maturation resolved on a CD10 / CD19 quadrant gate
DeepFCS

Many minds,
one read.

A multi-layered Cellular Intelligence — dozens of specialised models and agents, each reading the cells from its own angle and cross-checking the others. Every finding traces back to its markers.

Auto-GatingPopulation DiscoveryDisease Discovery Clonality & MRDInstrument-Aware
How It Works

From upload to result.

Every step is explicit — nothing hidden, nothing assumed.

Secure upload

Your FCS file is uploaded over an encrypted channel and stored encrypted at rest.

Anonymization

Patient identifiers are stripped before analysis. DeepFCS never needs — or sees — who the patient is.

Quality control

Instrument and panel detected automatically, scaling normalized, debris and doublets filtered out.

Population discovery & auto-gating

Every population is found, gated and named on the CD45 × SSC backbone — lymph, mono, gran, blast and CD34⁺ stem / progenitor cells — with no manual quadrants.

Immunophenotyping & marker interpretation

Every marker on the panel is read per population — positivity graded by intensity, clonality (κ:λ), aberrancy and MRD signals weighed as evidence.

Disease evidence scoring

Population-aware, exclusion-sensitive scoring built to EuroFlow and WHO standards — difference-from-normal, never a black box.

Review & correct

Not convinced by a read? Adjust a gate or a quadrant cursor in the built-in editors — the populations, counts and evidence re-compute on the spot, and the call stays yours.

Summary & report

A traceable disease summary and PDF — every finding linked back to its markers. In seconds.

DeepFCS Flow Cytometry Analysis Assistant ⧉ Copy chat ↓ Export PDF Ready
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DeepFCS can make mistakes. Every result must always be reviewed and confirmed by a qualified professional.
The Result

A disease summary,
built for the clinician.

Competing diagnoses, an honest confidence state, and the markers behind each — transparent. And meet Nova, the built-in analysis assistant: it reads the case and explains the evidence in plain language, every claim tied back to its markers. The call stays yours.

Pricing

Start when you're ready.
Scale as you grow.

Subscription credits — pick the tier that fits your lab.

Normal

Contact for pricing
50 credits included
  • Core analysis
  • PDF report
  • 1 user

Pro

Contact for pricing
250 credits included
  • MRD + Disease Summary
  • Nova assistant
  • Priority support

Max

Contact for pricing
1500 credits included
  • API access
  • Team / multi-user
  • Priority compute